Intramolecular/unimolecular/single-chain FRET biosensors

 
Targets Composition Name Lab PubMed Year
Tyrosine kinase, substrate phosphorylation
EGFR CFP-SH2 (Shc)-Substrate (synthetic)-YFP EGFR-indicator Tsien 11752449 2001
EGFR EGFR-CFP-PTB (Shc)-YFP FLAME Basitiaens 15215236 2004
EGFR α-helix-YFP-CrkII-CFP Picchu-Z Matsuda 15922734 2005
Insulin receptor CFP-Substrate (IRS1)-SH2 (p85)-YFP Phocus Umezawa 11875431 2002
Abl, EGFR YFP-CrkII-CFP Picchu Matsuda 11406630 2001
Abl, EGFR YPet-CrkII-EV-SECFP PicchuEV Matsuda 21976697 2011
Abl, EGFR CFP-CrkII-YFP Abl indicator Tsien 11752449 2001
Abl Venus-CrkL-ECFP Pickles Ohba 20670950 2010
Src TM (Cbp)-YFP-Substrate (Cbp)-SH2 (Csk)-CFP Chimera Okada 11880369 2003
Src CFP-SH2 (Src)- Substrate (synthetic)-YFP Src indicator Tsien 11752449 2001
Src CFP-SH2 (Src)- Substrate (synthetic)-YFP Src reporter Wang Y 15846350 2005
Src sfGFP-SH2 (Src)- Substrate (synthetic)-mTagBFP BG Src biosensor Zhang Z 23517824 2013
SYK ECFP-SH2 (SYK)- linker -Substrate-YPet SYK biosensor Zhu C 25541586 2011
ZAP70 mCFP-SH2 (Grb2)- linker -Substrate-YPet ROSA-XL Lellouch 25735979 2015
Tyrosine kinase, conformational change
FAK CFP-FERM-Citrine-kinase-FAT CYFAK413 Schaller 17967873 2008
FAK YFP-FERM-CFP-KD-FAT FERM-sensor Bunt 19208768 2009
FAK mCitrineFERM-TEV-protease site-ER/K-linke-mCerulean-kinase and FAT domains SPASM sensor Sivaramakrishnan 23393139 2009
Serine/threonine kinase, substrate phosphorylation
AGC family
PKA GFP-KID (PKA)-BFP ART Hagiwara 10700148 2000
PKA CFP-[14-3-3]-Substrate (synthetic)-YFP AKAR Tsien 11752448 2001
PKA Ypet-FHA1-EV-Substrate-ECFP AKAR3-EV Matsuda 21976697 2011
S6K YPet-FHA1-EV-Substrate-Turquiose Eevee-S6K Matsuda 21976697 2011
RSK YPet-FHA1-EV-Substrate-ECFP Eevee-RSK Matsuda 21976697 2011
Aurora B CFP-FHA2-substrate(Kif2 57-70)-YFP Aurora B sensor Kapoor 18463638 2008
Plk-1 CFP-FHA2-substrate(Myt1 421-432)-YFP Plk sensor Medema 18615013 2008
PKC CFP-FHA2 (Rad53P)-Substrate(synthetic)-YFP CKAR Newton 12782683 2003
PKC YFP-PH and DEP (pleckstrin)-GFP KCP-2 Schultz 16390103 2006
PKC YFP-PH and DEP (pleckstrin)-GFP KCAP-1 Schultz 16390103 2006
PKC C1-YPet-FHA1-EV-Substrate-ECFP Eevee-PKC Matsuda 21976697 2011
AKT/PKB CFP-[14-3-3]-substrate-YFP Aktus Umezawa 12773546 2003
AKT/PKB CFP-FHA2-substrate-YFP BKAR Newton 15583002 2005
Akt/PKB PH-YPet-FHA1-EV-Substrate-ECFP Eevee-Akt Matsuda 21976697 2011
Akt/PKB PH-YPet-FHA1-EV-Substrate-ECFP Eevee-iAkt Aoki 24212374 2014
Rho kinase/ROCK Ypet-FHA1-EV-Substrate-ECFP Eevee-ROCK Matsuda 27885213 2016
CMGC family
ERK CFP-FHA2-substrate-YFP-D domain Erkus Umezawa 17261026 2007
ERK mRFP-WW-Long linker-substrate-D domain-EGFP EKAR Sbovoda 19033456 2008
ERK Ypet-WW-EV-Substrate-D domain-ECFP EKAREV Matsuda 21976697 2011
ERK mTurquoise-WW-EV-Substrate-domain-cp175-Venus-Venus EKAREV-TVV Bodart JF 24434874 2014
JNK ECFP-FHA1-JDP2-JDP2delta-Citrine JNKAR1 Zhang 20212108 2010
JNK YPet-FHA1-EV-JDP2-JDP2delta-ECFP JNKAR1EV Matsuda 21976697 2011
p38 YPet-WW-Substrate-SECFP PerKy-381 Saito H 26399197 2015
STE family
SAP3K YFP-FHA1-MKK6 DN- DVD domain-CFP SAP3K reporter Saito 19737916 2009
CAMK family
MLCK, Rho kinase CFP-Myosin light chain-YFP CRCit Iino 19033456 2005
AMPK ECFP-FHA1-substrate-Venus AMPKAR Cantley 21459332 2011
AMPK ECFP-FHA1-substrate-cpV-E172 ABKAR Zhang 25788287 2015
PKD CFP-FHA2-substrate-YFP DKAR Newton 17189263 2007
TKL
Tak1 YPet-FHA1-EV-substrate-ECFP Eevee-Tak1 Matsuda 26931406 2007
atypical PK
ATM YFP-Chk2_substrate-FHA1-CFP ATM reporter Hunter 17428747 2007
Serine/threonine phosphatases, substrate type
Calcineurin (PP2B) CFP-NFAT-Venus CaNAR1 Zhang 18493642 2008
CDC25/Plk1 mTurquoise-FHA2-Cdc25-Ypet Cdc25C-S75 biosensor Gavet O 26254922 2016
Serine/threonine kinase, conformational change
AKT/PKB GFP-AKT-YFPdark GFP-AKT-YFP Larijani 12662152 2003
AKT/PKB PH (Akt)-YFP-AKT-CFP Akind Matsuda 17079732 2007
PKCdelta CFP-PKC-YFP CY-PKCdelta Blumberg 15611119 2005
c-Raf YFP-cRaf-CFP Prin-cRaf Matsuda 15711535 2005
B-Raf YFP-BRaf-CFP Prin-Braf Matsuda 16858395 2006
ERK YFP-ERK-CFP Miu2 Matsuda 16418172 2006
MLCK MLCK-GFP-BFP MLCK-FIP Chisholm 11815633 2002
MLCK MLCK-CFP-YFP MLCK-FIP Chew 20067998 2010
DAPK1 mTurquoise-DAPK1-Venus DAPK1(334)-F40 Schultz 20067998 2011
CAMK2a mTurquoise-Camk2a-Venus Camk2a(314)-F40 Schultz 20067998 2011
CAMK2a mTurquoise-Camk2a-Venus Camk2a-F63 Schultz 20067998 2011
CAMK2a YFP-Camk2a-CFP Camui-alpha Hayashi 20067998 2005
Histon methylation
Histon H3-K9, K27 CFP-Chromodomain-histonH3-YFP K9, K27 reporter Ting 15137760 2004
Histon H4-K5, K8 Venus-BRDT bromodomain-linker-HistoneH4-CFP Histac Yoshida 19805290 2009
Small GTPases  
Ras, Rap1 YFP-Ras-Raf-CFP Raichu-Ras, Rap1 Matsuda 11429608 2001
Ras Ypet-Ras-EV-Raf-TurquoiseGL RaichuEV-Ras Matsuda 21976697 2011
Ras, Rap1 RasRBD (Byr2)-Cerulean3-Venus-HRas DORA-Ras Mayer 25043303 2015
Ral YFP-Ral-RalBP1-CFP Raichu-RalA, RalB Matsuda 15034142 2004
RRas YFP-Rras-RalGDS-CFP Raichu-RRas Matsuda 17344481 2007
RhoA YFP-PKN-CFP Raichu-RhoA Matsuda 12860967 2003
RhoA RBD-CFP-YFP-RhoA RhoA biosensor Hahn 16547516 2006
RhoA YFP-Rhotekin-CFP Raichu-RBD Matsuda 12860967 2003
Rac1 YFP-PAK-Rac1-CFP Raichu-Rac1 Matsuda 12192056 2002
Rac, Cdc42 YFP-PAK-CFP Raichu-CRIB Matsuda 12192056 2002
Cdc42 YFP-PAK-Cdc42-CFP Raichu-Cdc42 Matsuda 12192056 2002
Rac, Cdc42 YPet-PAK-Rac1/Cdc42-CFP Raichu-Rac Wang 18799748 2008
Rac, Cdc42 YPet-PAK-EV-Rac1-CFP Raichu-Rac Matsuda 21976697 2011
Cdc42 Cdc42-YFP-GBD-ACV-CFP GEF sensor Rosen 12680752 2003
N-WASP/Cdc42 CFP-N-WASP-YFP N-WASP-BS Condeelis 15084285 2004
Cdc42 mCer-PAK_PBD- cp229Venus-Cdc42 Cdc42 biosensor Hodgson L 24798463 2014
TC10 YFP-POSH-TC10-CFP Raichu-TC10 Matsuda 16950130 2006
Rab5 YFP-EEA1-CFP-Rab5 Raichu-Rab5 Matsuda 18385674 2008
GPCR
PTHR PTHR-CFP-PTHR-YFP PTHR-cam Lohse 12808462 2003
2AAR 2AAR-CFP-2AAR-YFP 2AAR-cam Lohse 12808462 2003
Orexin receptor OX-Flash-OX-CFP OX1 FRET sensor Xu TR 22389503 2012
DHPR Gb-YFP-G β1a reporter Balijepalli RC 26114725 2015
Lipids
PIP3 CFP-PH (GRP)-YFP-membrane anchor Fllip/Pippi-PIP3 Umezawa 14528311 2003
PIP2 and PIP3 CFP-ActA-YFP-membrane anchor CAY Cicchetti 14967034 2003
PIP3, PI(3,4)P2 CFP-PH(Akt)-Pseudoligand-YFP InPAkt Zhang 16214892 2005
PI(4,5)P2 CFP-PH (GRP)-YFP-membrane anchor CYPHR Newton 12782683 2003
PI(4,5)P2 CFP-PH (PLCd)-YFP-membrane anchor Pippi-PI(4,5)P2 Matsuda 18685081 2008
PI(3,4)P2 CFP-PH (TAPP1)-YFP-membrane anchor Pippi-PI(3,4)P2 Matsuda 17079732 2007
IP3 CFP-IP3 receptor-YFP LIBRA Tojyo 15272011 2004
IP3 CFP-IP3 receptor-YFP fretino Umezawa 16053285 2005
IP3 CFP-IP3 receptor-YFP FIRE Mignery 16249182 2006
Diacylglycerol CFP-C1 (PKC)-YFP DAGR Newton 12782683 2003
Diacylglycerol CFP-CRD (PKC)-YFP-membrane anchor Daglas Umezawa 16990811 2006
Diacylglycerol CFP-CRD (PKC)-YFP-membrane anchor DIGDA Matsuda 18685081 2008
PI(4)P CFP-PH (GRP)-YFP-membrane anchor Pippi-PI(4)P Matsuda 18685081 2008
Phosphatidic acid CFP-PA binding doman-YFP-membrane anchor Pii Matsuda 20826779 2010
Ions
calcium CFP-Calmodulin-M13-YFP cameleon Tsien 9278050 1997
Other calcium sensors: Miyawaki and Niino 2015
Zn Cerulean-Atox1-WD4-Citrine eCALWY-1 Merkx M 19718032 2009
Zn Cerulean-HsCen2-Citrine MagFRET Merkx M 24312622 2013
Voltage
K+ channel Kv potassium channel-CFP-YFP VSFP1 Knoepfel 11454036 2001
Other voltage sensors: Lin and Schnitzer 2016
Steroids
androgen CFP-androgen binding domain-coactivator-YFP ficaro Umezawa 16555356 2006
estrogen/androgen CFP-estrogen or androgen receptor-YFP CEY, CAY Lannigan 15985367 2005
retinoic Acid CFP-RAR-YFP GEPRAs Miyawaki 23563268 2013
Amino acids
glutamate CFP-glutamate binding domain-YFP FLIPE Frommer 15939876 2005
glutamate ECFP-glutamate binding domain-Citrine GluSnFR Tsien 18332427 2008
l-arginine ECFP-AncQ-Venus cpFLIPR Jackson 26061224 2015
Citrate CFP-CitA-Venus CitA Zamboni 3229521 2011
Sugars
sugar CFP-sugar binding domain-YFP nanosensors Frommer 15667328 2005
sucrose eCFP-AtThuE -eYFP FLIPsuc Frommer 16912038 2006
glucose MglB(1-12)-ECFP-MglB (13-304)-linker-Citrine FLII12Pglu Frommer 18177733 2007
maltose ECFP-MBP-EYFP FLIPmal Frommer 12097642 2002
lactate mTFP-LidR-Venus Laconic Barros 23469056 2013
Sucrose, Trehalose eCFP-AtThuE-mVenus FLIPsuc90μΔ1Venus Kikawada 26214383 2015
Nucleotides
cGMP YFP-PKG-CFP CGY Umezawa 11140757 2000
cGMP CFP-GKI-YFP cygnet Dostmann 11226257 2001
cGMP YFP-phosphodiesterase-CFP pGES-DE2 Lohse 16369548 2006
cGMP T-Sappphire-PDE5-dimer2 red cGES-DE5 Oka 19551140 2009
cAMP CFP-Epac-YFP CFP-Epac-YFP Jalink 15550931 2004
cAMP CFP-Epac-YFP ICUE Zhang 15545605 2004
cAMP CFP-Epac-YFP Epac2-camps Lohse 15231839 2004
cAMP ECFP-Epac-Citrine Epac2-camps300-Cit Vincent 20427672 2010
cAMP mTurquoise-Epac-cp173Venus-Venus TEpacVV Jalink 21559477 2011
cAMP ECFP-cAMP-binding domain B (mammalian PKA RII beta-subunit)-YFP cAMP FRET sensor Parent 19808889 2009
ATP mseCFP-eSubunit(bacterial FoF1-ATP synthase)-cp173mVenus ATeam Noji 19720993 2009
ATP mKO-eSubunit(bacterial FoF1-ATP synthase)-cp173mVenus GO-ATeam Noji 21488691 2009
Proteases
Caspase3, 6 CFP-SGDEVD-YFP-RSRAQASVEID-mRFP CFP-c3-YFP-c6-mRFP He 16683263 2006
Caspase8 YFP-Bid-CFP CFP-c3-YFP-c6-mRFP Taira 12409609 2002
Caspase3, 9 ECFP-cleavage site (DEVD or VEID) -Venus SCAT3, 9 Miura 12527749 2003
Caspase3 BFP-DEVD-GFP BFP-DEVD-GFP Prehn 11964393 2002
Caspase3 CFP-DEVD-YFP CFP-DEVD-YFP Tavare 11256610 2000
Caspase3 EYFP-DEVD-EGFP EYFP-DEVD-EGFP Bastiaens 11175733 2001
Caspase3 EGFP-DEVD-EBFP EGFP-DEVD-EBFP Luo 9518501 1998
Caspase3 mAmetrine-DEVD-tdTomato, mCitrine-DEVD-mTFP1 mAmetrine-DEVD-tdCaspase3 biosensor Campbell 18425137 2008
MMP activity Igk-Chain-YFP-MSS-CFP-TM (PDGFR) YFP-MSS-CFPdisplay Luo 17187878 2007
MMP activity 6His-YFP-MSS-CFP YFP-MSS-CFPdisplay Luo 17187878 2007
MT1-MMP Ypet-[MMP substrate]-CFP MT1-MMP FRET biosensor Wang 18441011 2008
MT1-MMP mCherry-MT1-[MMP substrate]-mOrange2 MT1-MMP FRET biosensor Wang 20197470 2010
MMP-9 Signal peptide-Venus2-linker-Venus1-[MMP9 substrate]-linker-mTFP1-PDGFR MMP-9 activity biosensor Wlodarczyk J 24290700 2013
m-caplain activity EYFP-mCalpain cleavage site-ECFP-PDZ1-1 targeting seq YSCS Edelman 10688895 2000
ADAM17 TGFα-YPet-TNFα cleavage site-eCFP-PDGFR TSen Liu X 25714465 2015
Other signaling molecules
HIV Rev YFP-Rev peptide-CFP YRFnC-11ad Kobatake 16013840 2005
Presenilin (PS) GFP-PS1-RFP GFP-PS1-RFP Luo 19924286 2009
Plasma membrane Ca(2+) pump BFP-plasma membrane Ca2-pump-GFP BFP-PMCA-GFP Adamo 17901055 2007
LuxP CFP-LuxP (BAI-2 receptor)-YFP CLPY Sayre 17352493 2007
MyosinII YFP−myosin(motor domain)−CFP YFP-myosin-CFP Bagshaw 16939200 2006
MyosinII GFP−myosin(motor domain)−BFP GFP-myosin-BFP Bagshaw 16939200 2006
MyosinII His-GFP−S1dC (motor domain of MyosinII)−BFP chimaera Sutoh 9845076 1997
MyosinII His-BFP−S1dC−GFP chimaera Sutoh 9845076 1997
REDOX Cerulean-Yap1 c-CRD-Citrine Redoxfluor Sakai 20498274 2010
REDOX ECFP-RL7-EYFP redox biosensor Gaskins 21606117 2011
Pyruvate kinase Citrine-Pyruvate kinae-Cerulean PKAR Satin S 24100037 2013
Pyruvate kinase Cerulean-1.3C-Citrinen redox sensor Karp M 25224640 2014
Vinculin CFP-Vinculin-YFP vinculin activation biosensor Craig S 15883197 2005
Vinculin Vh-mTFP-elastic linker-Venus-Vt vinculin tension sensor Schwartz M 20613844 2010